:py:mod:`survey_post`
=====================
.. py:module:: survey_post
Module Contents
---------------
Functions
~~~~~~~~~
.. autoapisummary::
survey_post.arg_init
survey_post.t_string
survey_post.submit
survey_post.launch
survey_post.gen_selavy
survey_post.census
survey_post.get_census
survey_post.check_seq
survey_post.check_fits
survey_post.check_lk
survey_post.run_postpipe
survey_post.main
Attributes
~~~~~~~~~~
.. autoapisummary::
survey_post.NOFORMAT
survey_post.debug
survey_post.queue_max
survey_post.queue_per_field
survey_post.queue_extra
survey_post.queue_sleep
survey_post.explanation
survey_post.copy_script
survey_post.fcor_script
survey_post.sel_in
survey_post.sel_slurm
survey_post.askap_version
survey_post.scripts
.. py:data:: NOFORMAT
:value: '{noformat}\n'
.. py:data:: debug
:value: False
.. py:data:: queue_max
:value: 7000
.. py:data:: queue_per_field
:value: 60
.. py:data:: queue_extra
:value: 50
.. py:data:: queue_sleep
:value: 200
.. py:data:: explanation
:value: Multiline-String
.. raw:: html
Show Value
.. code-block:: python
"""
This is a post-processing pipeline for RACS
--------------------------------------------------------------
"""
.. raw:: html
Show Value
.. code-block:: python
"""#!/bin/bash
#SBATCH --export=NONE
#SBATCH --output=/group/askap/mcc381/logs/%j-copy.out
#SBATCH --error=/group/askap/mcc381/logs/%j-copy.err
#SBATCH --account=askap
#SBATCH --clusters=galaxy
#SBATCH --mail-user=david.mcconnell@csiro.au
#SBATCH --mail-type=FAIL
#SBATCH --nodes=1
#SBATCH --ntasks=1
#SBATCH --job-name=copy
#SBATCH --partition=workq
#SBATCH --time=00:05:00
source /home/mcc381/racs_init.sh
# Expects: pre-sh, csb, field
pre_sh="{0}"
csb="{1:d}"
field="{2}"
origin="/group/askap/chale/RACS/Common-Beam-Images/"
wildcard="*RACS_tes*cres.fits"
destdir=/askapbuffer/scott/mcc381/RACS/$csb/
$pre_sh
echo $origin$wildcard/$field to $destdir
cp --preserve=timestamps $origin$csb/$field/$wildcard $destdir$field
"""
.. raw:: html
Show Value
.. code-block:: python
"""#!/bin/bash -l
#SBATCH --cluster=galaxy
#SBATCH --partition=workq
#SBATCH --account=askap
#SBATCH --mail-user=david.mcconnell@csiro.au
#SBATCH --mail-type=FAIL
#SBATCH --time=00:28:00
#SBATCH --ntasks=1
#SBATCH --ntasks-per-node=1
#SBATCH --job-name=racsfluxcorrt
#SBATCH --export=NONE
#SBATCH --output=racs_flux_corr.out
source /home/mcc381/racs_init.sh
# Expects pre_sh, working_dir, file_name
pre_sh="{0}"
wd="{1}"
filename="{2}"
$pre_sh
cd $wd
echo $PWD
srun --export=ALL racs_flux_corr.py -c $RACS/fcorr.taylor.0.20200623_1441.fits -l $filename > $RACS/racs_flux_corr_${3}.out
"""
.. raw:: html
Show Value
.. code-block:: python
"""Selavy.image = {}
Selavy.sbid = {}
Selavy.sourceIdBase = {}
Selavy.imageHistory = ["Produced with ASKAPsoft version {}"]
Selavy.imagetype = fits
#
# These parameters define the measurement of spectral indices
Selavy.spectralTermsFromTaylor = true
Selavy.findSpectralTerms = [true, false]
Selavy.spectralTermImages = [{}, ]
Selavy.nsubx = 6
Selavy.nsuby = 3
Selavy.overlapx = 0
Selavy.overlapy = 0
#
Selavy.resultsFile = {}
#
# Detection threshold
Selavy.snrCut = 5
Selavy.flagGrowth = true
Selavy.growthThreshold = 3
#
Selavy.VariableThreshold = true
Selavy.VariableThreshold.boxSize = 50
Selavy.VariableThreshold.imagetype = fits
Selavy.Weights.weightsImage = {}
Selavy.Weights.weightsCutoff = 0.04
#
Selavy.Fitter.doFit = true
Selavy.Fitter.fitTypes = [full]
Selavy.Fitter.numGaussFromGuess = true
Selavy.Fitter.maxReducedChisq = 10.
Selavy.Fitter.imagetype = fits
Selavy.Fitter.writeComponentMap = false
#
Selavy.threshSpatial = 5
Selavy.flagAdjacent = true
#
Selavy.minPix = 3
Selavy.minVoxels = 3
Selavy.minChannels = 1
Selavy.sortingParam = -pflux
#
# Precision of values
# Selavy.precFlux = 5
# Selavy.precSize = 4
# Selavy.precShape = 4
# Selavy.precPos = 6
# Selavy.precSolidangle = 4
# Selavy.precSNR = 4
# Not performing RM Synthesis for this case
Selavy.RMSynthesis = false"""
.. raw:: html
Show Value
.. code-block:: python
"""#!/bin/bash -l
#SBATCH --time=02:00:00
#SBATCH --nodes=2
#SBATCH --job-name=selavy
#SBATCH --no-requeue
#SBATCH --export=NONE
#SBATCH --mail-user=david.mcconnell@csiro.au
#SBATCH --mail-type=FAIL
#SBATCH --account=askap
#SBATCH -M galaxy
#SBATCH -p workq
source /home/mcc381/racs_init.sh
module load casa
{0}
cd $RACS/scripts/tmp
srun --export=ALL --ntasks=19 --ntasks-per-node=10 selavy -c {1} > $RACS/selavy_${2}.out
"""
.. raw:: html